Wednesday, 23 August 2017

Modeling and simulation of biological systems using SPICE language

Morgan Madec1, Christophe Lallement1, Jacques Haiech2
1ICube, UMR7357, CNRS / Université de Strasbourg, France
2LIT, UMR 7200, CNRS / Université de Strasbourg, France
Published: August 7, 2017
doi: 10.1371/journal.pone.0182385

Abstract: The article deals with BB-SPICE (SPICE for Biochemical and Biological Systems), an extension of the famous Simulation Program with Integrated Circuit Emphasis (SPICE). BB-SPICE environment is composed of three modules: a new textual and compact description formalism for biological systems, a converter that handles this description and generates the SPICE netlist of the equivalent electronic circuit and NGSPICE which is an open-source SPICE simulator. In addition, the environment provides back and forth interfaces with SBML (System Biology Markup Language), a very common description language used in systems biology. BB-SPICE has been developed in order to bridge the gap between the simulation of biological systems on the one hand and electronics circuits on the other hand. Thus, it is suitable for applications at the interface between both domains, such as development of design tools for synthetic biology and for the virtual prototyping of biosensors and lab-on-chip. Simulation results obtained with BB-SPICE and COPASI (an open-source software used for the simulation of biochemical systems) have been compared on a benchmark of models commonly used in systems biology. Results are in accordance from a quantitative viewpoint but BB-SPICE outclasses COPASI by 1 to 3 orders of magnitude regarding the computation time. Moreover, as our software is based on NGSPICE, it could take profit of incoming updates such as the GPU implementation, of the coupling with powerful analysis and verification tools or of the integration in design automation tools (synthetic biology).

GeNeDA results from the collaboration between three laboratories:
The Laboratory of Engineering Sciences, Computer Sciences and Imaging, ICube, UMR7357, CNRS / Université de Strasbourg, France (Morgan MADEC, Yves GENDRAULT, Elise ROSATI and Christophe LALLEMENT)
The Laboratory of Therapeutic Innovation, LIT, UMR 7200, CNRS / Université de Strasbourg, France (Jacques HAIECH)
The Laboratory of Computer Sciences of Paris 6, LIP6, UMR7606, CNRS / Université Pierre et Marie Curie, Paris, France (François PECHEUX)

Relared papers has been published recently
[1] M. Madec, F. Pêcheux, Y. Gendrault, E. Rosati, C. Lallement and J. Haiech, "GeNeDA: An Open-Source Workflow for Design Automation of Gene Regulatory Networks Inspired from Microelectronics", Journal of Computational Biology, June 2016. doi:10.1089/cmb.2015.0229.
[2] M. Madec et al., "Reuse of Microelectronics Software for Gene Regulatory Networks Design Automation", 1st international conference of the GDB BioSynSys, Paris (FR), Sept. 2016.
[3] M. Madec et al., "EDA inspired Open-source Framework for Synthetic Biology", IEEE 2013 BioCAS Conference, Rotterdam (NL), Nov. 2013.

Germany’s RWTH Aachen University and AMO launch joint Aachen Graphene & 2D-Materials Center

RWTH Aachen University and AMO GmbH in Germany have launched a new joint research center with a focus on efficiently bridging the gap between fundamental science and applications within graphene and related materials-based electronics and photonics.
Sharing the vision of bringing graphene and related materials research from the lab into applications, the five founding principal investigators of the Aachen Graphene and 2D-Materials Center (who are also all members of the EU-funded Graphene Flagship project) are professor Christoph Stampfer (of RWTH, and spokesman for the center), professor Max Lemme (of AMO and RWTH), professor Markus Morgenstern (of RWTH), professor Renato Negra (of RWTH) and Dr Daniel Neumaier (of AMO).
“The center will help to turn the exciting properties of graphene and 2D [two-dimensional] materials into true functions, making these materials not only fascinating for scientists but also serving society,” said Christoph Stampfer following the center’s kick-off meeting on 24 July. “With the Aachen Graphene and 2D-Material Center, we aim at increasing the visibility of Aachen as an excellent place to undertake graphene and 2D material research with both a fundamental and applied focus.”
The center enables the integration of the already ongoing work from RWTH Aachen University and AMO under a legal framework that allows for full collaboration between the groups. In particular, the center will focus on addressing the challenges of future technology including high-frequency electronics, flexible electronics, energy-efficient sensing, photonics as well as spintronics and valleytronics with graphene and related materials and their heterostructures.
Founding Members of the Aachen Graphene and 2D Materials Center:
  • Prof. Christoph Stampfer, RWTH Aachen University (Spokesman)
  • Prof. Max Lemme, RWTH Aachen University/AMO GmbH
  • Prof. Markus Morgenstern , RWTH Aachen University
  • Prof. Renato Negra, RWTH Aachen University
  • Dr. Daniel Neumaier, AMO GmbH

Saturday, 19 August 2017

Performance Assessment of A Novel Vertical Dielectrically Modulated TFET-Based Biosensor - IEEE Xplore #paper https://t.co/jRvJS3MUTs


from Twitter https://twitter.com/wladek60

August 19, 2017 at 10:11AM
via IFTTT

Friday, 18 August 2017

A Threshold Voltage #Model of Tri-Gate Junctionless Field-Effect Transistors Including Substrate Bias Effects https://t.co/sEviQXJbB3


from Twitter https://twitter.com/wladek60

August 18, 2017 at 01:42PM
via IFTTT

[paper] Improvements to a compact MOSFET model for design by hand

Improvements to a compact MOSFET model for design by hand
A. de Jesus Costa, F. Martins Cardoso, E. Pinto Santana and A. I. Araújo Cunha
15th IEEE NEWCAS
Strasbourg, France, 2017, pp. 225-228
doi: 10.1109/NEWCAS.2017.8010146

Abstract: In this work, an improved version of the basic structure of a compact MOSFET model and the respective parameters extraction methodology are proposed. The aim of this approach is to increase accuracy in hand calculations for analog circuit design without significantly increasing its complexity. The influences of both inversion level and channel length are considered in the modeling of a few features such as mobility, threshold voltage and onset of saturation. Simple design examples of current sinks and sources are accomplished to compare the basic and the improved models [read more...]

Thursday, 17 August 2017

[mos-ak] [Workshop Program] 15th MOS-AK ESSDERC/ESSCIRC Workshop in Leuven Sept.11 2017

15th MOS-AK ESSDERC/ESSCIRC Compact Modeling Workshop
Leuven; Monday Sept.11, 2017 (8:30-17:00)
Workshop Program online http://www.mos-ak.org/leuven_2017/ 

Together with International MOS-AK Board of R&D Advisers: Larry Nagel, Omega Enterprises Consulting (USA), Andrei Vladimirescu, UCB (USA); ISEP (FR) and Jean-Michel Sallese, EPFL (CH), Daniel Tomaszewski, ITE (PL), MOS-AK Technical Program Coordinators as well as all the Extended MOS-AK TPC Members, we have pleasure to invite to the 15th consecutive MOS-AK workshop organized as an integral part of the ESSDERC/ESSCIRC Conferences in Leuven on Sept.11, 2017. The MOS-AK workshop is organized with aims to strengthen a network and discussion forum among experts in the field, enhance open platform for information exchange related to the compact/SPICE modeling and its Verilog-A standardization, bring people in the compact modeling field together, as well as obtain feedback from technology developers, circuit designers, and CAD/EDA tool developers and vendors. 

Final Program of 15th MOS-AK ESSDERC/ESSCIC Workshop is available online:

(Parkstraat 45, 3000 Leuven) 
room AV 91.12

Online MOS-AK/Leuven Workshop Registration:
(any related inquiries can be sent to register@mos-ak.org)

The MOS-AK workshop will be followed by four session of the ESSDERC Track4 "Device and Circuit Compact Modeling". These four lecture sessions include one invited and 14 pear reviewed papers in the compact/SPICE modeling and Verilog-A standardization domain:

Tuesday September 12, 2017 (11:00-12:20)
Chair: Wladek Grabinski - MOS-AK; Cristell Maneux - U-Bordeaux;
Tuesday September 12, 2017 (14:00-15:20)
Chair: Thierry Poiroux - CEA
Tuesday September 12, 2017 (16:40-18:00)
Chair: Jean-Michel Sallese - EPFL; Daniel Tomaszewski - ITE;
Wednesday September 13, 2017 (14:20-15:40)
Chair: Benjamin Iniguez - URV; Sadayuki Yoshitomi - Toshiba;

MOS-AK Postworkshop Publications:
Selected best MOS-AK technical presentation will be recommended for further publication

WG170817

--
You received this message because you are subscribed to the Google Groups "mos-ak" group.
To unsubscribe from this group and stop receiving emails from it, send an email to mos-ak+unsubscribe@googlegroups.com.
To post to this group, send email to mos-ak@googlegroups.com.
Visit this group at https://groups.google.com/group/mos-ak.
For more options, visit https://groups.google.com/d/optout.

Wednesday, 16 August 2017

Review of commercial SiC MOSFET models: Topologies and equations - IEEE Xplore #paper https://t.co/LS090HojeE


from Twitter https://twitter.com/wladek60

August 16, 2017 at 11:22AM
via IFTTT

Monday, 14 August 2017

[paper] Compact Electro-Mechanical-Fluidic Model for Actuated Fluid Flow System

Compact Electro-Mechanical-Fluidic Model for Actuated Fluid Flow System
T. K. Maiti, Member, IEEE, L. Chen, H. Zenitani, H. Miyamoto, Member, IEEE,
M. Miura-Mattausch, Fellow, IEEE, and H. J. Mattausch, Senior Member, IEEE
in IEEE Journal on Multiscale and Multiphysics Computational Techniques, 
vol. 2, no. , pp. 124-133, 2017.
doi: 10.1109/JMMCT.2017.2731878

Abstract: This paper presents a compact electro-mechanical-fluidic system-modeling method for multidomain system simulation based on multidomain physics that considers the total energy conservation condition, in terms of respective potential and flow quantities. Models for electrical, mechanical, and fluidic domains are developed to design the example of a blood pumping system, where the blood flow is driven by electrically controlled organic actuators. The electrical domain includes an organic mosfet-based control circuit, the mechanical domain includes organic actuators, and the fluidic domain includes a flexible fluid-flow channel. Control circuit, actuators, and fluid models are coupled through equivalent circuits, where interconnection relationships between two neighboring domains are expressed using the energy conservation concept. The model accuracy is verified with finite element method (FEM) based numerical simulation. Significantly faster simulation speed than with FEM and good accuracy were achieved [read more...]

TABLE: CORRESPONDING FORCE AND FLOW EQUATIONS FOR ELECTRICAL AND
MECHANICAL DOMAINS ARE SUMMARIZED [21]-[23]


[21] S. D. Senturia, Microsystems Design. Norwell, MA: Kluwer Academic Publisher, 2001.
[22] T. K. Maiti, L. Chen, H. Miyamoto, M. Miura-Mattausch, and H. J. Mattausch, “Modeling of electrostatically actuated fluid flow system for mixed-domain simulation,” in 20th Int. Conf. on Simulation of Semiconductor Processes and Devices (SISPAD), pp. 190-193, Sept. 2015, USA.
[23] T. K. Maiti, L. Chen, H. Miyamoto, M. Miura-Mattausch, and H. J. Mattausch, “Mixed domain compact modeling framework for fluid flow driven by electrostatic organic actuators,” in 45th European Solid-State Device Research Conference (ESSDERC), pp. 52-55, Sept. 2015, Austria. 

A General and Transformable #Model Platform for Emerging Multi-Gate MOSFETs - IEEE Xplore Document https://t.co/q27OgRX5Fd


from Twitter https://twitter.com/wladek60

August 14, 2017 at 02:01PM
via IFTTT

Mini-Colloquium (MQ) on Nanoelectronics

AGENDA
DATE: Saturday Aug. 26, 2016
VENUE: IIT Kanpur L16
This Mini-Colloquium (MQ) on Nanoelectronics is being hosted by the IEEE Electron Device Society UP Chapter in collaboration with the Department of Electrical Engineering at IIT Kanpur. Distinguished speakers from renowned universities will be presenting on wide range of topics in Nanoelectronics. The MQ will be organized into 1 hour talks by the speakers. The agenda would be as follows:

TimeTopicSpeaker
9:00 - 9:15Inauguration
9:15 - 9:30High Tea
9:30 - 10:30Nanotransistors with 2D materials: Opportunities and ChallengesProf. Navkanta Bhat
IISc
10:30 - 11:30Revisiting gate C-V characterization for high mobility semiconductor MOS devicesProf. Anisul Haque
East West Univ.
11:30 - 11:45Tea
11:45 - 12:45Prof. V. Ramgopal Rao
IIT Delhi
12:45 - 14:15Lunch
14:15 - 15:15ASM-HEMT - First Industry Standard Compact Model for GaN HEMTsProf. Yogesh Singh Chauhan
IIT Kanpur
15:15 - 16:15Spintronics - Perspectives and ChallengesProf. Brajesh Kumar Kaushik
IIT Roorkee
16:15 - 16:30Tea
16:30 - 17:30Advanced Hetero structure based Nano Scale MOSFETsProf. Chandan Kumar Sarkar
Jadavpur Univ.
Coordinator: Dr. Yogesh S.Chauhan IIT Kanpur, India
Website: http://www.iitk.ac.in/nanolab/MQ/index.html

Monday, 7 August 2017

ICCDCS 2017

Tenth International Caribbean Conference on Devices, Circuits and Systems (ICCDCS 2017)

June 5-7 2017, Cozumel, México
08:00 to 9:00RegistrationRegistrationRegistration 
08:45 to 9:00Opening Ceremony
09:00 to 10:00Key Note 1: "Adaptive Heterogenous Multi-Core Technologies- Intelligent, Interconnected and Integrated Cyber-Physical Systems (I3CPS)"Jürgen BeckerKey Note 3: "The Life and Times of Eugeni García"Benjamín ÍñiguezKey Note 6: "On the Extraction Methods for MOSFET Series Resistance and Mobility Degradation using a Single Test Device",Adelmo Ortiz Conde
10:00 to 10:30BreakBreakBreak
10:30 to 12:30Session 1Session 3Session 5
10:30 to 10:50"Model Based Photopic Electroretinogram Source Separation: A Multiresolution Analysis Approach"Prashanth Chetlur Adithya, Alaql Abdulrahman, Radouil Tzekov, Ravi Sankar and Wilfrido Moreno"A Programmable CMOS Voltage Controlled Ring Oscillator for Radio-Frequency Diathermy On-chip Circuit"Antonio Corres- Matamoros, Esteban Martinez-Guerrero and Jose E. Rayas-Sanchez"Health Index Assessment for Power Transformers with Thermal Upgraded Paper up to 230kV, Using Fuzzy Inference. Part II: A Sensibility Analysis"Diego Chacón, Juan Pablo Lata and Ricardo Medina
10:50 to 11:10"Analytical Model Parameter Determination for Microwave On-Chip Inductors up to the Second Resonant Frequency"José Valdés Rayón, Reydezel Torres and Roberto Murphy"A logarithmic CMOS image sensor with wide output voltage swing range"Fernando Campos, Mário Bordon, Marcelo Silva and Jacobus Swart"Implementation Model Using a Hippocratic Protocol in Mobile Terminals with NFC Technology"Carlos Kowalevicz, Jose Pirrone Puma and Monica Huerta
11:10 to 11:30"Energy Consumption Improvement based on Distance Adaptive Modulation in Optical Elastic Network"Sabi Bandiri, Rafael Braga, Tales Pimenta and Danilo Spadoti"Improving Magnitude Response in Two-Stage Corrector Comb Structure"Gordana Jovanovic Dolecek and Lyda Herrera Sepulveda"Internet of Things as an Attack Vector to Critical Infrastructures of Cities"Pablo Leonidas Gallegos-Segovia, Jack Fernando M. Larios-Rosillo and Erwin Jairo Sacoto-Cabrera
11:30 to 11:50"Switching Region Analysis for SOTB Technology"Carlos Cortes Torres, Nobuyuki Yamasaki and Hideharu Amano"Analysis of the influence of the buffer layer in the characteristic impedance of electro-optic modulators"Ana Gabriela Correa Mena, Luis Alejandro González Mondragón, Leidy Johana Quinteros Rodríguez, José Valdés Rayón and Ignacio Enrique Zaldívar Huerta"Sensors for Parkinson's Disease Evaluation"Raquel Torres, Monica Huerta, Ricardo Gonzalez, Roger Clotet and Juan Pablo Bermeo
11:50 to 12:10"Scalable Models to Represent the Via-Pad Capacitance and Via-Traces Inductance in Multilayer PCB High-Speed Interconnects"Abraham Isidoro Muñoz, Miguel Angel Tlaxcalteco Matus, Reydezel Torres Torres and Gaudencio Hernandez Sosa"Impact of neglecting the metal losses on the extraction of the relative permittivity from PCB transmission line measurements"Erika Yazmin Teran Bahena and Reydezel Torres Torres"QoS Evaluation of VPN in a Raspberry Pi devices over Wireless Network"Luis Caldas, Juan Jara and Mónica Huerta
12:10 to 12:30"Implementation of a Reconfigurable Neural Network in FPGA"Janaina Oliveira, Robson Moreno, Odilon Dutra and Tales Pimenta"Reconfigurable FIR Filter Coefficient Optimization in Post-Silicon Validation to Improve Eye Diagram for Optical Interconnects",Ismael Duron-Rosales, Francisco E. Rangel-Patino, Jose E. Rayas-Sanchez, Jose L. Chavez-Hurtado and Nagib Hakim"A Proposed Digital Predistorter Based on NLMS and PSO Algorithms"Omar Alngar, Walid El-Deeb and El-Sayed El-Rabaie
12:30 to 15:00LunchLunchClosing remarks
15:00 to 16:00Key Note 2: "Following the Path of 3D Integration"Malgorzata Chrzanowska-JeskeKey Note 4: “Modeling and Verification of Heterogeneous Systems”Filipe Vinci
16:00 to 16:15BreakPoster Introduction*
16:15 to 17:55Session 2Session 4
16:15 to 16:35"MRAM control Transistor Resilience against Heavy-Ion Impacts", Walter Enrique Calienes Bartra, Raphael Brum, Guilherme Flach and Ricardo ReisBreak w/poster session (16:15 to 17:00)
16:35 to 16:55"A Charge-controlled Memristor Model for Image Edge Detection with a Memristive Grid"Arturo Sarmiento and Yojanes Rodríguez-Velásquez
16:55 to 17:15"Characterization and modelling of Ag/TiO2/ITO devices exhibiting bipolar memristive properties", Jesús Jiménez-León, Arturo Sarmiento, Carlos De La Cruz Blas and Cristina Gomez-Polo
17:15 to 17:35"Assessing the accuracy of the open, short and open-short de-embedding methods for on-chip transmission line s-parameters measurements"Juan Garcia Santos and Reydezel TorresKey Note 5: (17:00 to 18:00) "Innovation by ASIC design and emerging substream markets"Jacobus Swart
17:35 to 17:55"Evaluation of Interconnects Based on Electromigration Criteria and Circuit Performance"Rafael Nunes, Roberto Orio and Jacobus Swart
19:00Welcome Cocktail
19:30Conference Banquet
Poster Session:
"Differentiated synchronization plus FHIR a solution for EMR's Ecosystem", Roger Clotet, Emilio Hernández and Monica Karel Huerta
"Design and Validation of a Portable Radio-Frequency Diathermy Prototype", Antonio Corres-Matamoros, Esteban Martinez-Guerrero and Jose E. Rayas-Sanchez
"Stimulating social interaction among elderly people through sporadic social networks", Jorge Osmani Ordoñez-Ordoñez, Jack Fernando Bravo-Torres, Oscar David Sari-Villa, Esteban Fernando Ordoñez-Morales, Martín López-Nores and Yolanda Blanco-Fernández
"Sensing Climatic Variables in a Orchid Greenhouse", Luis Fernandez, Mónica Huerta, Giovanni Sagbay, Roger Clotet and Angel Soto
"Low cost system for monitoring physiological signals using FPGA and Android Tablet", J. Bucheli, D. Rivas, J. Gavilema, D. Mullo, J. L. Carrillo, M. Huerta

Thursday, 3 August 2017

Basics of MOSFET Modeling


Basics of MOSFET Modeling with LabVIEW/LTspice 
  • Introduction to MOSFET Models 
  • Functions and Parameter Extraction
  • visit http://mosfet-engineer.blogspot.com

[paper] On the Physical Behavior of Cryogenic IV and III-V Schottky Barrier MOSFET Devices

On the Physical Behavior of Cryogenic IV and III–V Schottky Barrier MOSFET Devices
Mike Schwarz, Member, IEEE, Laurie E. Calvet, Member, IEEE, John P. Snyder, Member, IEEE, Tillmann Krauss, Udo Schwalke, Senior Member, IEEE, and Alexander Kloes, Senior Member, IEEE
in IEEE TED , vol.PP, no.99, pp.1-8
doi: 10.1109/TED.2017.2726899

Abstract: The physical influence of temperature down to the cryogenic regime is analyzed in a comprehensive study and the comparison of IV and III-V Schottky barrier (SB) double-gate MOSFETs. The exploration is done using the Synopsys TCAD Sentaurus device simulator and first benchmarked with experimental data. The important device physics of both SB-MOSFETs and conventional MOSFETs are reviewed. The impact of temperature on device performance down to the liquid-nitrogen regime is then explored. We find reduced drive currents in SB-MOSFETs fabricated on small effective mass materials and that SB lowering can significantly improve SB-MOSFETs, especially at low temperatures [read more...]

This article has been accepted for inclusion in a future issue of this journal. Content is final as presented, with the exception of pagination

Tuesday, 1 August 2017

[paper] Circuit-level simulation methodology for Random Telegraph Noise by using Verilog-AMS


T. Komawaki, M. Yabuuchi, R. Kishida, J. Furuta, T. Matsumoto and K. Kobayashi
Circuit-level simulation methodology for Random Telegraph Noise by using Verilog-AMS
2017 IEEE ICICDT, Austin, TX, USA, 2017, pp. 1-4.
doi: 10.1109/ICICDT.2017.7993526

Abstract: As device sizes are downscaled to nanometer, Random Telegraph Noise (RTN) becomes dominant. It is indespensable to accurately estimate the effect of RTN. We propose the RTN simulation method for analog circuits. It is based on the charge trapping model. We replicate the RTN-induced threshold voltage fluctuation to attach a variable DC voltage source to the gate of MOSFET by using Verilog-AMS. We confirm that drain current of MOSFETs temporally fluctuates. The fluctuations of RTN are different for each MOSFET. Our proposed method can be applied to estimate the temporal impact of RTN including multiple transistors. We can successfully replicate RTN-induced frequency fluctuations in 3-stage ring oscillators as similar as the measurement results [read more...]

Circuit Design and Simulation Project using eSim

Invitation to participate in Circuit Design and Simulation Project using eSim

The FOSSEE (Free and Open Source Software for Education) project based at lIT Bombay has initiated a Circuit Design and Simulation Project using esim (an open source EDA tool for circuit design, simulation, analysis and PCB design).

Interested candidates can take any solved electronic circuit from any source and redesign it using eSim and submit it to us. Candidates will be rewarded with certificates and honorarium after a review process. These circuits will also be published on our website under an appropriate open source license. 

For more details, please visit: http://esim.fossee.in/circuit-simulation-project